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CATlasv1
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CATlas
Mouse Cortex - CATlas dataset
Epigenetic signal tracks
Cell browser
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Usage Tips:
Utilize the multi-select options to add or remove cell types as needed.
By exploring various data types in the
'Datatypes'
section, you can initiate the loading of specific tracks.
The
'showing'
option provides various visualization choices for integrating data:
[Merged]-By cell type:
combines different data types from the same cell type.
[Merged]-By data Type :
aggregates the same data type across various cell types.
[Scaled]-By cell type:
normalizes data of the same type to a consistent scale.
[Log-transformed]-log:
applies logarithmic transformations to the data.
Modality
ATAC(ATAC)
Astro_Myoc.ATAC(Astrocytes,myoclonus,ATAC)
Astro_Nnat.ATAC(Astrocytes,Neuronatin,ATAC)
Endothelial.ATAC(Endothelial,ATAC)
Ependymal.ATAC(Ependymal,ATAC)
FC_CT.ATAC(Front cortex,pyramidal tract excitatory neurons,ATAC)
FC_L23.ATAC(Front cortex, L23,ATAC)
FC_L4.ATAC(Front cortex, L4,ATAC)
FC_L5.ATAC(Front cortex, L5,ATAC)
FC_L6.ATAC(Front cortex, L6,ATAC)
FC_NP.ATAC(Frontal cortex, near projecting excitatory neurons,ATAC)
FC_PT.ATAC(Frontal cortex, pyramidal tract excitatory neurons,ATAC)
HC_CA1.ATAC(Hippocampus, cornu ammonis1,ATAC)
HC_CA23.ATAC(Hippocampus, cornu ammonis23,ATAC)
HC_DG.ATAC(Hippocampus, Dentate gyrus,ATAC)
In_CGE.ATAC(Inhibitory neurons, CGE,ATAC)
In_Pvalb.ATAC(Inhibitory neurons, Pvalb,ATAC)
In_Sst.ATAC(Inhibitory neurons,Sst,ATAC)
Microglia.ATAC(Microglia,ATAC)
Oligo_MFOL.ATAC(Myelin forming oligodendrocytes (MFOL),ATAC)
Oligo_MOL.ATAC(Mature oligodendrocytes,ATAC)
OPC.ATAC(Oligodendrocytes precursor cells,ATAC)
H3K27ac(H3K27ac)
Astro_Myoc.H3K27ac(Astrocytes,myoclonus,H3K27ac)
Astro_Nnat.H3K27ac(Astrocytes,Neuronatin,H3K27ac)
Endothelial.H3K27ac(Endothelial,H3K27ac)
Ependymal.H3K27ac(Ependymal,H3K27ac)
FC_CT.H3K27ac(Front cortex,pyramidal tract excitatory neurons,H3K27ac)
FC_L23.H3K27ac(Front cortex, L23,H3K27ac)
FC_L4.H3K27ac(Front cortex, L4,H3K27ac)
FC_L5.H3K27ac(Front cortex, L5,H3K27ac)
FC_L6.H3K27ac(Front cortex, L6,H3K27ac)
FC_NP.H3K27ac(Frontal cortex, near projecting excitatory neurons,H3K27ac)
FC_PT.H3K27ac(Frontal cortex, pyramidal tract excitatory neurons,H3K27ac)
HC_CA1.H3K27ac(Hippocampus, cornu ammonis1,H3K27ac)
HC_CA23.H3K27ac(Hippocampus, cornu ammonis23,H3K27ac)
HC_DG.H3K27ac(Hippocampus, Dentate gyrus,H3K27ac)
In_CGE.H3K27ac(Inhibitory neurons, CGE,H3K27ac)
In_Pvalb.H3K27ac(Inhibitory neurons, Pvalb,H3K27ac)
In_Sst.H3K27ac(Inhibitory neurons,Sst,H3K27ac)
Microglia.H3K27ac(Microglia,H3K27ac,H3K4me)
Oligo_MFOL.H3K27ac(Myelin forming oligodendrocytes (MFOL),H3K27ac)
Oligo_MOL.H3K27ac(Mature oligodendrocytes,H3K27ac)
OPC.H3K27ac(Oligodendrocytes precursor cells,H3K27ac)
H3K27me3(H3K27me3)
Astro_Myoc.H3K27me3(Astrocytes,myoclonus,H3K27me3)
Astro_Nnat.H3K27me3(Astrocytes,Neuronatin,H3K27me3)
Endothelial.H3K27me3(Endothelial,H3K27me3)
Ependymal.H3K27me3(Ependymal,H3K27me3)
FC_CT.H3K27me3(Front cortex,pyramidal tract excitatory neurons,H3K27me3)
FC_L23.H3K27me3(Front cortex, L23,H3K27me3)
FC_L4.H3K27me3(Front cortex, L4,H3K27me3)
FC_L5.H3K27me3(Front cortex, L5,H3K27me3)
FC_L6.H3K27me3(Front cortex, L6,H3K27me3)
FC_NP.H3K27me3(Frontal cortex, near projecting excitatory neurons,H3K27me3)
FC_PT.H3K27me3(Frontal cortex, pyramidal tract excitatory neurons,H3K27me3)
HC_CA1.H3K27me3(Hippocampus, cornu ammonis1,H3K27me3)
HC_CA23.H3K27me3(Hippocampus, cornu ammonis23,H3K27me3)
HC_DG.H3K27me3(Hippocampus, Dentate gyrus,H3K27me3)
In_CGE.H3K27me3(Inhibitory neurons, CGE,H3K27me3)
In_Pvalb.H3K27me3(Inhibitory neurons, Pvalb,H3K27me3)
In_Sst.H3K27me3(Inhibitory neurons,Sst,H3K27me3)
Microglia.H3K27me3(Microglia,H3K27me3)
Oligo_MFOL.H3K27me3(Myelin forming oligodendrocytes (MFOL),H3K27me3)
Oligo_MOL.H3K27me3(Mature oligodendrocytes,H3K27me3)
OPC.H3K27me3(Oligodendrocytes precursor cells,H3K27me3)
H3K4me1(H3K4me1)
Astro_Myoc.H3K4me1(Astrocytes,myoclonus,H3K4me1)
Astro_Nnat.H3K4me1(Astrocytes,Neuronatin,H3K4me1)
Endothelial.H3K4me1(Endothelial,H3K4me1)
Ependymal.H3K4me1(Ependymal,H3K4me1)
FC_CT.H3K4me1(Front cortex,pyramidal tract excitatory neurons,H3K4me1)
FC_L23.H3K4me1(Front cortex, L23,H3K4me1)
FC_L4.H3K4me1(Front cortex, L4,H3K4me1)
FC_L5.H3K4me1(Front cortex, L5,H3K4me1)
FC_L6.H3K4me1(Front cortex, L6,H3K4me1)
FC_NP.H3K4me1(Frontal cortex, near projecting excitatory neurons,H3K4me1)
FC_PT.H3K4me1(Frontal cortex, pyramidal tract excitatory neurons,H3K4me1)
HC_CA1.H3K4me1(Hippocampus, cornu ammonis1,H3K4me1)
HC_CA23.H3K4me1(Hippocampus, cornu ammonis23,H3K4me1)
HC_DG.H3K4me1(Hippocampus, Dentate gyrus,H3K4me)
In_CGE.H3K4me1(Inhibitory neurons, CGE,H3K4me)
In_Pvalb.H3K4me1(Inhibitory neurons, Pvalb,H3K4me)
In_Sst.H3K4me1(Inhibitory neurons,Sst,H3K4me)
Microglia.H3K4me1(Microglia)
Oligo_MFOL.H3K4me1(Myelin forming oligodendrocytes (MFOL),H3K4me)
Oligo_MOL.H3K4me1(Mature oligodendrocytes,H3K4me)
OPC.H3K4me1(Oligodendrocytes precursor cells,H3K4me)
H3K4me3(H3K4me3)
Astro_Myoc.H3K4me3(Astrocytes,myoclonus,H3K4me3)
Astro_Nnat.H3K4me3(Astrocytes,Neuronatin,H3K4me3)
Endothelial.H3K4me3(Endothelial,H3K4me3)
Ependymal.H3K4me3(Ependymal,H3K4me3)
FC_CT.H3K4me3(Front cortex,pyramidal tract excitatory neurons,H3K4me3)
FC_L23.H3K4me3(Front cortex, L23,H3K4me3)
FC_L4.H3K4me3(Front cortex, L4,H3K4me3)
FC_L5.H3K4me3(Front cortex, L5,H3K4me3)
FC_L6.H3K4me3(Front cortex, L6,H3K4me3)
FC_NP.H3K4me3(Frontal cortex, near projecting excitatory neurons,H3K4me3)
FC_PT.H3K4me3(Frontal cortex, pyramidal tract excitatory neurons,H3K4me3)
HC_CA1.H3K4me3(Hippocampus, cornu ammonis1,H3K4me3)
HC_CA23.H3K4me3(Hippocampus, cornu ammonis23,H3K4me3)
HC_DG.H3K4me3(Hippocampus, Dentate gyrus,H3K4me3)
In_CGE.H3K4me3(Inhibitory neurons, CGE,H3K4me3)
In_Pvalb.H3K4me3(Inhibitory neurons, Pvalb,H3K4me3)
In_Sst.H3K4me3(Inhibitory neurons,Sst,H3K4me3)
Microglia.H3K4me3(Microglia,H3K4me3)
Oligo_MFOL.H3K4me3(Myelin forming oligodendrocytes (MFOL),H3K4me3)
Oligo_MOL.H3K4me3(Mature oligodendrocytes,H3K4me3)
OPC.H3K4me3(Oligodendrocytes precursor cells,H3K4me3)
H3K9me3(H3K9me3)
Astro_Myoc.H3K9me3(Astrocytes,myoclonus,H3K9me3)
Astro_Nnat.H3K9me3(Astrocytes,Neuronatin,H3K9me3)
Endothelial.H3K9me3(Endothelial,H3K9me3)
Ependymal.H3K9me3(Ependymal,H3K9me3)
FC_CT.H3K9me3(Front cortex,pyramidal tract excitatory neurons,H3K9me3)
FC_L23.H3K9me3(Front cortex, L23,H3K9me3)
FC_L4.H3K9me3(Front cortex, L4,H3K9me3)
FC_L5.H3K9me3(Front cortex, L5,H3K9me3)
FC_L6.H3K9me3(Front cortex, L6,H3K9me3)
FC_NP.H3K9me3(Frontal cortex, near projecting excitatory neurons,H3K9me3)
FC_PT.H3K9me3(Frontal cortex, pyramidal tract excitatory neurons,H3K9me3)
HC_CA1.H3K9me3(Hippocampus, cornu ammonis1,H3K9me3)
HC_CA23.H3K9me3(Hippocampus, cornu ammonis23,H3K9me3)
HC_DG.H3K9me3(Hippocampus, Dentate gyrus,H3K9me3)
In_CGE.H3K9me3(Inhibitory neurons, CGE,H3K9me3)
In_Pvalb.H3K9me3(Inhibitory neurons, Pvalb,H3K9me3)
In_Sst.H3K9me3(Inhibitory neurons,Sst,H3K9me3)
Microglia.H3K9me3(Microglia,H3K9me3)
Oligo_MFOL.H3K9me3(Myelin forming oligodendrocytes (MFOL),H3K9me3)
Oligo_MOL.H3K9me3(Mature oligodendrocytes,H3K9me3)
OPC.H3K9me3(Oligodendrocytes precursor cells,H3K9me3)
RNAneg(RNAneg)
Astro_Myoc.RNAneg(Astrocytes,myoclonus,RNAneg)
Astro_Nnat.RNAneg(Astrocytes,Neuronatin,RNAneg)
Endothelial.RNAneg(Endothelial,RNAneg)
Ependymal.RNAneg(Ependymal,RNAneg)
FC_CT.RNAneg(Front cortex,pyramidal tract excitatory neurons,RNAneg)
FC_L23.RNAneg(Front cortex, L23,RNAneg)
FC_L4.RNAneg(Front cortex, L4,RNAneg)
FC_L5.RNAneg(Front cortex, L5,RNAneg)
FC_L6.RNAneg(Front cortex, L6,RNAneg)
FC_NP.RNAneg(Frontal cortex, near projecting excitatory neurons,RNAneg)
FC_PT.RNAneg(Frontal cortex, pyramidal tract excitatory neurons,RNAneg)
HC_CA1.RNAneg(Hippocampus, cornu ammonis1,RNAneg)
HC_CA23.RNAneg(Hippocampus, cornu ammonis23,RNAneg)
HC_DG.RNAneg(Hippocampus, Dentate gyrus,RNAneg)
In_CGE.RNAneg(Inhibitory neurons, CGE,RNAneg)
In_Pvalb.RNAneg(Inhibitory neurons, Pvalb,RNAneg)
In_Sst.RNAneg(Inhibitory neurons,Sst,RNAneg)
Microglia.RNAneg(Microglia,RNAneg)
Oligo_MFOL.RNAneg(Myelin forming oligodendrocytes (MFOL),RNAneg)
Oligo_MOL.RNAneg(Mature oligodendrocytes,RNAneg)
OPC.RNAneg(Oligodendrocytes precursor cells,RNAneg)
RNApos(RNApos)
Astro_Myoc.RNApos(Astrocytes,myoclonus,RNApos)
Astro_Nnat.RNApos(Astrocytes,Neuronatin,RNApos)
Endothelial.RNApos(Endothelial,RNApos)
Ependymal.RNApos(Ependymal,RNApos)
FC_CT.RNApos(Front cortex,pyramidal tract excitatory neurons,RNApos)
FC_L23.RNApos(Front cortex, L23,RNApos)
FC_L4.RNApos(Front cortex, L4,RNApos)
FC_L5.RNApos(Front cortex, L5,RNApos)
FC_L6.RNApos(Front cortex, L6,RNApos)
FC_NP.RNApos(Frontal cortex, near projecting excitatory neurons,RNApos)
FC_PT.RNApos(Frontal cortex, pyramidal tract excitatory neurons,RNApos)
HC_CA1.RNApos(Hippocampus, cornu ammonis1,RNApos)
HC_CA23.RNApos(Hippocampus, cornu ammonis23,RNApos)
HC_DG.RNApos(Hippocampus, Dentate gyrus,RNApos)
In_CGE.RNApos(Inhibitory neurons, CGE,RNApos)
In_Pvalb.RNApos(Inhibitory neurons, Pvalb,RNApos)
In_Sst.RNApos(Inhibitory neurons,Sst,RNApos)
Microglia.RNApos(Microglia,RNApos)
Oligo_MFOL.RNApos(Myelin forming oligodendrocytes (MFOL),RNApos)
Oligo_MOL.RNApos(Mature oligodendrocytes,RNApos)
OPC.RNApos(Oligodendrocytes precursor cells,RNApos)
Class
bigwig
bedpe
bed
Merged
By data type
Scaled
By cell type
Log-transformed
log
Cell Names and Colors
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